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Tools for sequence and genome analysis

Reverse Complement
Reverse Complement converts a DNA sequence into its reverse, complement, or reverse-complement counterpart.

Translate
Translate is a tool which allows the translation of a nucleotide (DNA/RNA) sequence to a protein sequence.

European Bioinformatics Institute (EMBL-EBI)
Part of the European Molecular Biology Laboratory, EMBL-EBI provides
data and bioinformatics services

National Center for Biotechnology Information (NCBI)
A service provided by the U.S. National Library of Medicine. The NCBI hosts genomic and genetic resources

Genome
A NCBI resource containing sequence and map data from the whole genomes of over 1000 organisms including plants, insects, viruses, viroids, plasmids and organelles

Basic Local Alignment Search Tool (BLAST)
A NCBI resource, BLAST compares nucleotide or protein sequences to sequence databases and finds regions of similarity.

Universal Protein Resource (UniProt)
Collaborative protein sequence and annotation database

Joint Genome Institute (JGI)
A U.S. Department of Energy resource, the Joint Genome Institute Portal provides access to JGI genomic datasets and analytical tools.

Phytozome
A JGI resource, Phytozome is a plant comparative genomics portal for analyzing plant genomes.

Elixir
European resource that includes databases, software tools and training

Pathogen-Host Interactions Base (PHI-base)
Molecular and biological information on genes proven to affect the outcome of pathogen-host interactions

CerealsDB
A range of facilities for the study of the wheat genome

AphidBase
A reference system providing genomic resources for the study of aphids.

PhylaphidB@se
Aphid ecolology, molecular identifications and systematics database of two aphid physical collections

Whitefly Genome Database
Annotated Whitefly Bemisia tabaci genome

Genomic Open-source Breeding Informatics Initiative (GOBii)
Application of open-source high-density genotypic information in the breeding of staple crops in the developing world.

Galaxy
Open source, web-based platform for data intensive biomedical research. You can use it to process and analyse various types and formats of next generation sequence data. Each account is provided with a quota of 250GB.